كتاب MATLAB Bioinformatics Toolbox User's Guide
منتدى هندسة الإنتاج والتصميم الميكانيكى
بسم الله الرحمن الرحيم

أهلا وسهلاً بك زائرنا الكريم
نتمنى أن تقضوا معنا أفضل الأوقات
وتسعدونا بالأراء والمساهمات
إذا كنت أحد أعضائنا يرجى تسجيل الدخول
أو وإذا كانت هذة زيارتك الأولى للمنتدى فنتشرف بإنضمامك لأسرتنا
وهذا شرح لطريقة التسجيل فى المنتدى بالفيديو :
http://www.eng2010.yoo7.com/t5785-topic
وشرح لطريقة التنزيل من المنتدى بالفيديو:
http://www.eng2010.yoo7.com/t2065-topic
إذا واجهتك مشاكل فى التسجيل أو تفعيل حسابك
وإذا نسيت بيانات الدخول للمنتدى
يرجى مراسلتنا على البريد الإلكترونى التالى :

Deabs2010@yahoo.com


-----------------------------------
-Warning-

This website uses cookies
We inform you that this site uses own, technical and third parties cookies to make sure our web page is user-friendly and to guarantee a high functionality of the webpage.
By continuing to browse this website, you declare to accept the use of cookies.
منتدى هندسة الإنتاج والتصميم الميكانيكى
بسم الله الرحمن الرحيم

أهلا وسهلاً بك زائرنا الكريم
نتمنى أن تقضوا معنا أفضل الأوقات
وتسعدونا بالأراء والمساهمات
إذا كنت أحد أعضائنا يرجى تسجيل الدخول
أو وإذا كانت هذة زيارتك الأولى للمنتدى فنتشرف بإنضمامك لأسرتنا
وهذا شرح لطريقة التسجيل فى المنتدى بالفيديو :
http://www.eng2010.yoo7.com/t5785-topic
وشرح لطريقة التنزيل من المنتدى بالفيديو:
http://www.eng2010.yoo7.com/t2065-topic
إذا واجهتك مشاكل فى التسجيل أو تفعيل حسابك
وإذا نسيت بيانات الدخول للمنتدى
يرجى مراسلتنا على البريد الإلكترونى التالى :

Deabs2010@yahoo.com


-----------------------------------
-Warning-

This website uses cookies
We inform you that this site uses own, technical and third parties cookies to make sure our web page is user-friendly and to guarantee a high functionality of the webpage.
By continuing to browse this website, you declare to accept the use of cookies.



 
الرئيسيةالبوابةأحدث الصورالتسجيلدخولحملة فيد واستفيدجروب المنتدى

شاطر
 

 كتاب MATLAB Bioinformatics Toolbox User's Guide

اذهب الى الأسفل 
كاتب الموضوعرسالة
Admin
مدير المنتدى
مدير المنتدى
Admin

عدد المساهمات : 18764
التقييم : 34816
تاريخ التسجيل : 01/07/2009
الدولة : مصر
العمل : مدير منتدى هندسة الإنتاج والتصميم الميكانيكى

كتاب MATLAB Bioinformatics Toolbox User's Guide  Empty
مُساهمةموضوع: كتاب MATLAB Bioinformatics Toolbox User's Guide    كتاب MATLAB Bioinformatics Toolbox User's Guide  Emptyالخميس 16 فبراير 2023, 1:19 am

أخواني في الله
أحضرت لكم كتاب
MATLAB Bioinformatics Toolbox User's Guide
MathWorks

كتاب MATLAB Bioinformatics Toolbox User's Guide  M_m_b_11
و المحتوى كما يلي :


Getting Started
Bioinformatics Toolbox Product Description . 1-2
Key Features 1-2
Product Overview 1-3
Features 1-3
Expected Users 1-4
Data Formats and Databases 1-5
Sequence Alignments 1-7
Sequence Utilities and Statistics . 1-8
Protein Property Analysis . 1-9
Phylogenetic Analysis . 1-10
Microarray Data Analysis Tools . 1-11
Microarray Data Storage . 1-12
Mass Spectrometry Data Analysis . 1-13
Graph Theory Functions . 1-15
Statistical Learning and Visualization 1-16
Prototyping and Development Environment . 1-17
Data Visualization 1-18
Exchange Bioinformatics Data Between Excel and MATLAB 1-19
Using Excel and MATLAB Together . 1-19
About the Example . 1-19
Before Running the Example . 1-19
Running the Example for the Entire Data Set . 1-20
Editing Formulas to Run the Example on a Subset of the Data 1-21
Using the Spreadsheet Link product to Interact With the Data in MATLAB
Working with Whole Genome Data 1-25
Comparing Whole Genomes 1-32
v
ContentsHigh-Throughput Sequence Analysis
2
Work with Next-Generation Sequencing Data . 2-2
Overview . 2-2
What Files Can You Access? . 2-2
Before You Begin . 2-3
Create a BioIndexedFile Object to Access Your Source File 2-3
Determine the Number of Entries Indexed By a BioIndexedFile Object . 2-3
Retrieve Entries from Your Source File . 2-4
Read Entries from Your Source File . 2-4
Manage Sequence Read Data in Objects . 2-6
Overview . 2-6
Represent Sequence and Quality Data in a BioRead Object 2-7
Represent Sequence, Quality, and Alignment/Mapping Data in a BioMap
Object . 2-8
Retrieve Information from a BioRead or BioMap Object . 2-10
Set Information in a BioRead or BioMap Object . 2-12
Determine Coverage of a Reference Sequence 2-12
Construct Sequence Alignments to a Reference Sequence . 2-13
Filter Read Sequences Using SAM Flags . 2-14
Store and Manage Feature Annotations in Objects . 2-16
Represent Feature Annotations in a GFFAnnotation or GTFAnnotation
Object 2-16
Construct an Annotation Object . 2-16
Retrieve General Information from an Annotation Object 2-16
Access Data in an Annotation Object 2-17
Use Feature Annotations with Sequence Read Data 2-18
Bioinformatics Toolbox Software Support Packages 2-21
Install Support Package . 2-21
Available Support Packages 2-21
Count Features from NGS Reads 2-23
Identifying Differentially Expressed Genes from RNA-Seq Data . 2-32
Visualize NGS Data Using Genomics Viewer App . 2-52
Open the App . 2-52
Add Tracks by Importing Data 2-52
Visualize Single Nucleotide Variation in Cytochrome P450 . 2-53
Exploring Genome-Wide Differences in DNA Methylation Profiles . 2-58
Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data
. 2-79
Working with Illumina/Solexa Next-Generation Sequencing Data . 2-97
vi ContentsSequence Analysis
3
Exploring a Nucleotide Sequence Using Command Line 3-2
Overview of Example 3-2
Searching the Web for Sequence Information 3-2
Reading Sequence Information from the Web 3-4
Determining Nucleotide Composition 3-5
Determining Codon Composition . 3-8
Open Reading Frames 3-11
Amino Acid Conversion and Composition 3-13
Exploring a Nucleotide Sequence Using the Sequence Viewer App 3-15
Overview of the Sequence Viewer 3-15
Importing a Sequence into the Sequence Viewer 3-15
Viewing Nucleotide Sequence Information . 3-17
Searching for Words 3-19
Exploring Open Reading Frames . 3-22
Closing the Sequence Viewer . 3-25
Explore a Protein Sequence Using the Sequence Viewer App . 3-26
Overview of the Sequence Viewer 3-26
Viewing Amino Acid Sequence Statistics . 3-26
Closing the Sequence Viewer . 3-28
References . 3-29
Compare Sequences Using Sequence Alignment Algorithms . 3-30
View and Align Multiple Sequences 3-41
Overview of the Sequence Alignment App 3-41
Visualize Multiple Sequence Alignment 3-41
Adjust Sequence Alignments Manually 3-42
Rearrange Rows . 3-50
Generate Phylogenetic Tree from Aligned Sequences . 3-52
Analyzing Synonymous and Nonsynonymous Substitution Rates 3-55
Investigating the Bird Flu Virus . 3-65
Exploring Primer Design . 3-81
Identifying Over-Represented Regulatory Motifs . 3-91
Predicting and Visualizing the Secondary Structure of RNA Sequences
3-102
Using HMMs for Profile Analysis of a Protein Family 3-114
Predicting Protein Secondary Structure Using a Neural Network 3-131
Visualizing the Three-Dimensional Structure of a Molecule . 3-148
Calculating and Visualizing Sequence Statistics 3-163
viiAligning Pairs of Sequences . 3-177
Assessing the Significance of an Alignment 3-185
Using Scoring Matrices to Measure Evolutionary Distance 3-194
Calling Bioperl Functions from MATLAB 3-198
Accessing NCBI Entrez Databases with E-Utilities . 3-210
Microarray Analysis
4
Managing Gene Expression Data in Objects 4-2
Representing Expression Data Values in DataMatrix Objects 4-5
Overview of DataMatrix Objects 4-5
Constructing DataMatrix Objects . 4-5
Getting and Setting Properties of a DataMatrix Object . 4-6
Accessing Data in DataMatrix Objects . 4-6
Representing Expression Data Values in ExptData Objects 4-9
Overview of ExptData Objects 4-9
Constructing ExptData Objects . 4-9
Using Properties of an ExptData Object . 4-10
Using Methods of an ExptData Object . 4-10
References . 4-11
Representing Sample and Feature Metadata in MetaData Objects . 4-12
Overview of MetaData Objects 4-12
Constructing MetaData Objects . 4-13
Using Properties of a MetaData Object 4-15
Using Methods of a MetaData Object . 4-15
Representing Experiment Information in a MIAME Object . 4-16
Overview of MIAME Objects 4-16
Constructing MIAME Objects . 4-16
Using Properties of a MIAME Object . 4-17
Using Methods of a MIAME Object . 4-18
Representing All Data in an ExpressionSet Object 4-19
Overview of ExpressionSet Objects . 4-19
Constructing ExpressionSet Objects 4-20
Using Properties of an ExpressionSet Object . 4-21
Using Methods of an ExpressionSet Object . 4-21
Analyzing Illumina Bead Summary Gene Expression Data . 4-23
Detecting DNA Copy Number Alteration in Array-Based CGH Data 4-44
Analyzing Array-Based CGH Data Using Bayesian Hidden Markov
Modeling . 4-60
viii ContentsVisualizing Microarray Data 4-74
Gene Expression Profile Analysis 4-95
Working with Affymetrix Data . 4-112
Preprocessing Affymetrix Microarray Data at the Probe Level . 4-131
Analyzing Affymetrix SNP Arrays for DNA Copy Number Variants 4-142
Working with GEO Series Data . 4-162
Identifying Biomolecular Subgroups Using Attractor Metagenes 4-173
Working with the Clustergram Function . 4-185
Working with Objects for Microarray Experiment Data . 4-203
Phylogenetic Analysis
5
Using the Phylogenetic Tree App . 5-2
Overview of the Phylogenetic Tree App . 5-2
Opening the Phylogenetic Tree App . 5-2
File Menu . 5-3
Tools Menu . 5-11
Window Menu 5-17
Help Menu . 5-18
Building a Phylogenetic Tree for the Hominidae Species 5-19
Analyzing the Origin of the Human Immunodeficiency Virus . 5-25
Bootstrapping Phylogenetic Trees . 5-32
Mass Spectrometry and Bioanalytics
Preprocessing Raw Mass Spectrometry Data . 6-2
Visualizing and Preprocessing Hyphenated Mass Spectrometry Data Sets
for Metabolite and Protein/Peptide Profiling 6-19
Identifying Significant Features and Classifying Protein Profiles 6-38
Differential Analysis of Complex Protein and Metabolite Mixtures using
Liquid Chromatography/Mass Spectrometry (LC/MS) . 6-52
ixGenetic Algorithm Search for Features in Mass Spectrometry Data . 6-71
Batch Processing of Spectra Using Sequential and Parallel Computing

#ماتلاب,#متلاب,#Matlab,

كلمة سر فك الضغط : books-world.net
The Unzip Password : books-world.net
أتمنى أن تستفيدوا من محتوى الموضوع وأن ينال إعجابكم

رابط من موقع عالم الكتب لتنزيل كتاب MATLAB Bioinformatics Toolbox User's Guide
رابط مباشر لتنزيل كتاب MATLAB Bioinformatics Toolbox User's Guide
الرجوع الى أعلى الصفحة اذهب الى الأسفل
 
كتاب MATLAB Bioinformatics Toolbox User's Guide
الرجوع الى أعلى الصفحة 
صفحة 2 من اصل 1
 مواضيع مماثلة
-
» كتاب Matlab - Deep Learning Toolbox - Getting Started Guide
» كتاب MATLAB - Curve Fitting Toolbox - User's Guide
» كتاب MATLAB Text Analytics Toolbox User's Guide
» كتاب Matlab Symbolic Math Toolbox User's Guide
» كتاب MATLAB Statistics and Machine Learning Toolbox - User's Guide

صلاحيات هذا المنتدى:لاتستطيع الرد على المواضيع في هذا المنتدى
منتدى هندسة الإنتاج والتصميم الميكانيكى :: المنتديات الهندسية :: منتدى شروحات البرامج الهندسية-
انتقل الى: